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Frank Loebe

Main Contact via IfI

Frank Loebe
University of Leipzig
Computer Science Institute
Postal Address: P.O.Box 100920, 04009 Leipzig
Street Address: Augustusplatz 10, 04109 Leipzig
Room: Paulinum, P812


Tel.: +49 341 97 32236
Fax: +49 341 97 32299


Email, Workpage

Contact via IMISE

Frank Loebe
Universität Leipzig
Institut für Medizinische Informatik, Statistik und Epidemiologie
Härtelstraße 16-18, Zimmer 207
04107 Leipzig

Tel.: +49 341 97 32236
Fax: +49 341 97 32299
E-Mail, Workpage

Contents



Affiliation

I'm a scholar at the University of Leipzig, employed as a research assistant at the Computer Science Institute (IfI) in the group Intelligent Systems (ISYS). I'm further associated with the Institute of Medical Informatics, Statistics and Epidemiology (IMISE), there primarily with the group Ontologies in Medicine (Onto-Med).


Research Interests


Publications

Highlighted

Frank Loebe (2015). Ontological Semantics: An Attempt at Foundations of Ontology Representation. PhD Thesis. Department of Mathematics and Computer Science, University of Leipzig.
PDF, URN
Ringo Baumann, Frank Loebe and Heinrich Herre (2014). Axiomatic Theories of the Ontology of Time in GFO. Applied Ontology 9(3–4):171–215.
DOI, PDF DocumentPDF
Frank Loebe (2007). Abstract vs. social roles – Towards a general theoretical account of roles. Applied Ontology 2(2):127–158.
URL, PDF DocumentPDF
Heinrich Herre, Barbara Heller, Patryk Burek, Robert Hoehndorf, Frank Loebe, Hannes Michalek (2006). General Formal Ontology (GFO): A Foundational Ontology Integrating Objects and Processes. Part I: Basic Principles (Version 1.0). Onto-Med Report No. 8. Research Group Ontologies in Medicine (Onto-Med), University of Leipzig.
PDF DocumentPDF

Journal Articles and Book Chapters

Ringo Baumann, Frank Loebe and Heinrich Herre (2014). Axiomatic Theories of the Ontology of Time in GFO. Applied Ontology 9(3–4):171–215.
DOI, PDF DocumentPDF
Thomas Neumuth, Frank Loebe and Pierre Jannin (2012). Similarity Metrics for Surgical Process Models. Artificial Intelligence in Medicine 54(1):15–27.
DOI
Dayana Neumuth, Frank Loebe, Heinrich Herre and Thomas Neumuth (2011). Modeling surgical processes: A four-level translational approach. Artificial Intelligence in Medicine 51(3):147–161.
DOI
Heinrich Herre, Robert Hoehndorf, Janet Kelso, Frank Loebe and Stefan Schulz (2011). OBML — Ontologies in Biomedicine and Life Sciences. Journal of Biomedical Semantics 2(Suppl 4):I1.1-I1.6.
DOI, PDF
Frank Loebe (2010). Organization and Management of Large Categorical Systems. In: Roberto Poli, Michael Healy, Achilles Kameas (ed.): Theory and Applications of Ontology: Computer Applications. Chapter 3, p.67–100. Dordrecht: Springer.
DOI, PDF DocumentPDF
Michael Hartung, Frank Loebe, Heinrich Herre and Erhard Rahm (2010). Management of Evolving Semantic Grid Metadata Within a Collaborative Platform. Information Sciences 180(10):1837–1849.
(revised and significantly extended version of the 2008 proceedings publication with the same set of authors)
DOI
Robert Hoehndorf, Joshua Bacher, Michael Backhaus, Serge E. Gregorio, Frank Loebe, Kay Prüfer, Alexandr Uciteli, Johann Visagie, Heinrich Herre and Janet Kelso (2009). BOWiki: An ontology-based wiki for annotation of data and integration of knowledge in biology. BMC Bioinformatics 10(Suppl 5):S5.1-S5.8.
(revised version of the 2008 proceedings publication with the same title)
DOI, URL
Robert Hoehndorf, Frank Loebe, Roberto Poli, Heinrich Herre and Kelso (2008). GFO-Bio: A biological core ontology. Applied Ontology 3(4):219–227.
(part of the special issue Towards a Metaontology for the Biomedical Domain)
DOI, PDF DocumentPDF
Robert Hoehndorf, Frank Loebe, Janet Kelso and Heinrich Herre (2007). Representing default knowledge in biomedical ontologies: Application to the integration of anatomy and phenotype ontologies. BMC Bioinformatics 8:377.1-377-12.
DOI
Frank Loebe (2007). Abstract vs. social roles – Towards a general theoretical account of roles. Applied Ontology 2(2):127–158.
URL, PDF DocumentPDF
Patryk Burek, Robert Hoehndorf, Frank Loebe, Johann Visagie, Heinrich Herre, Janet Kelso. (2006) A top-level ontology of functions and its application in the Open Biomedical Ontologies. Bioinformatics 22(14):e66-e73.    also: Proceedings of the 14th Annual International Conference on Intelligent Systems For Molecular Biology (ISMB 2006), Fortaleza, Brazil, Aug 6–10
DOI

Conferences and Workshops

Patryk Burek, Frank Loebe, and Heinrich Herre (2015). A UML Profile for Functional Modeling Applied to the Molecular Function Ontology. In: Francisco M. Couto and Janna Hastings (ed.): Proceedings of the International Conference on Biomedical Ontology, ICBO 2015, Lisbon, Portugal, Jul 27–30. CEUR Workshop Proceedings Vol. 1515. Aachen, Germany: CEUR-WS.org.
PDF DocumentPDF
Vinay K. Chaudhri and Frank Loebe (2014). Modeling of Continuity and Change in Biology. In: Giancarlo Guizzardi, Oscar Pastor, Yair Wand, Sergio de Cesare, Frederik Gailly, Mark Lycett, and Chris Partridge (ed.): Onto.CoM/ODISE 2014 – Proceedings of the 1st Joint Workshop on Ontologies in Conceptual Modeling and Information Systems Engineering, Rio de Janeiro, Brazil, Sep 22. CEUR Workshop Proceedings Vol. 1301. Aachen, Germany: CEUR-WS.org.
PDF DocumentPDF
Ringo Baumann, Frank Loebe and Heinrich Herre (2012). Ontology of Time in GFO. In: Maureen Donelly and Giancarlo Guizzardi (ed.): Formal Ontology in Information Systems: Proceedings of the 7th International Conference on Formal Ontology in Information Systems, FOIS 2012, Graz, Austria, Jul 24–27. Frontiers in Artificial Intelligence and Applications Vol. 239, p. 293–306. Amsterdam: IOS Press.
(2nd best paper award)
DOI, PDF DocumentPDF
Frank Loebe (2011). Ontological Usage Schemes: A Working Proposal for the Ontological Foundation of Language Use. In: Olga De Troyer, Claudia Bauzer Medeiros, Roland Billen, Pierre Hallot, Alkis Simitsis and Hans van Mingroot (ed.): Advances in Conceptual Modeling: Recent Developments and New Directions: Proceedings of the ER 2011 Workshops FP-UML, MoRE-BI, Onto-CoM, SeCoGIS, Variability@ER, WISM, Brussels, Belgium, Oct 31-Nov 3. LNCS 6999, p. 193–202. Heidelberg: Springer.
DOI
Frank Loebe, Frank Stumpf, Robert Hoehndorf and Heinrich Herre (2011). Towards Improving Phenotype Representation in OWL. In: Heinrich Herre, Robert Hoehndorf, Frank Loebe (ed.): Proceedings of the 3rd Workshop of the GI Workgroup “Ontologies in Biomedicine and Life Sciences” (OBML): Berlin, Germany, Oct 6–7. IMISE-Report 1/2011, p. H1-H7. Institute of Medical Informatics, Statistics and Epidemiology, University of Leipzig.
PDF DocumentPDF
Heinrich Herre, Robert Hoehndorf, Frank Loebe (ed.): Proceedings of the 3rd Workshop of the GI Workgroup “Ontologies in Biomedicine and Life Sciences” (OBML): Berlin, Germany, Oct 6–7. IMISE-Report 1/2011. Institute of Medical Informatics, Statistics and Epidemiology, University of Leipzig.
PDF DocumentPDF
Patryk Burek, Heinrich Herre and Frank Loebe (2009). Ontological Analysis of Functional Decomposition. In: Hamido Fujita, Vladimir Marik (ed.): Proceedings of the 8th International Conference on Software Methodologies, Tools and Techniques, SOMET 2009, Prague, Czech Republic, Sep 23–25. Frontiers in Artificial Intelligence and Applications Vol. 199, p.428–439. Amsterdam: IOS Press.
DOI
Roland Mücke, Matthias Löbe, Magnus Knuth, Frank Loebe (2009). A Semantic Model for Representing Items in Clinical Trials. In: Proceedings of the 22nd IEEE Symposium on Computer-Based Medical Systems, CBMS 2009, Albuquerque, New Mexico, USA, Aug 3–4. Los Alamitos, California, USA: IEEE Press.
DOI
Frank Loebe and Heinrich Herre (2008). Formal Semantics and Ontologies: Towards an Ontological Account of Formal Semantics. In: Carola Eschenbach and Michael Grüninger (ed.): Formal Ontology in Information Systems: Proceedings of the 5th International Conference, FOIS 2008, Saarbrücken, Germany, Oct 31-Nov 3. Frontiers in Artificial Intelligence Vol. 183, p. 49–62. Amsterdam: IOS Press.
DOI,PDF DocumentPDF
Michael Hartung, Frank Loebe, Heinrich Herre and Erhard Rahm (2008). A Platform for Collaborative Management of Semantic Grid Metadata. In: Costin Badica, Giuseppe Mangioni, Vincenza Carchiolo and Dumitru Dan Burdescu (ed.): Intelligent Distributed Computing, Systems and Applications: Proceedings of the 2nd International Symposium on Intelligent Distributed Computing, IDC 2008, Catania, Italy. Studies in Computational Intelligence Vol. 162, p.115–125. Berlin: Springer.
DOI
Robert Hoehndorf, Joshua Bacher, Michael Backhaus, Serge E. Gregorio, Frank Loebe, Kay Prüfer, Alexandr Uciteli, Johann Visagie, Heinrich Herre and Janet Kelso (2008). BOWiki: An ontology-based wiki for annotation of data and integration of knowledge in biology. In: Phillip Lord, Nigam Shah, Susanna-Assunta Sansone and Matthew Cockerill (ed.): Proceedings of the 11th Annual Bio-Ontologies Meetings, Toronto, Canada, Jul 20.   full proceedings available as: PDF DocumentPDF
(cf. revised journal version in 2009 with the same title)
PDF DocumentPDF
Frank Loebe (2006). Requirements for Logical Modules. In: Peter Haase, Vasant Honavar, Oliver Kutz, York Sure & Andrei Tamilin (ed.): Proceedings of the First International Workshop on Modular Ontologies (WoMO 2006), Athens, Georgia, USA, Nov 5.
PDF DocumentPDF
Robert Hoehndorf, Kay Pruefer, Michael Backhaus, Heinrich Herre, Janet Kelso, Frank Loebe, Johann Visagie (2006). A proposal for a gene function wiki. In: Robert Meersman, Zahir Tari & Pilar Herrero: On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops: Proceedings, Montpellier, France, Oct 29 – Nov 3 [workshop title: Knowledge Systems in Bioinformatics, KSinBIT 2006]. Lecture Notes in Computer Science Vol. 4277, p.669–678. Berlin: Springer.
PDF DocumentPDF
Heinrich Herre, Frank Loebe. (2005) A Meta-ontological Architecture for Foundational Ontologies. In: Robert Meersman, Zahir Tari (ed.) On the Move to Meaningful Internet Systems 2005: CoopIS, DOA, and ODBASE: Proceedings of the OTM Confederated International Conferences, CoopIS, DOA, and ODBASE 2005, Agia Napa, Cyprus, Oct 31 – Nov 4 (Part II). Lecture Notes in Computer Science Vol. 3761, p.1398–1415. Berlin: Springer.
PDF DocumentPDF
Frank Loebe. (2005) Abstract vs. Social Roles: A Refined Top-level Ontological Analysis. In: Guido Boella, James Odell, Leendert van der Torre and Harko Verhagen (ed.) Proceedings of the 2005 AAAI Fall Symposium 'Roles, an Interdisciplinary Perspective: Ontologies, Languages, and Multiagent Systems', Arlington, Virginia, Nov 3–6. Fall Symposium Series Technical Reports FS-05–08. p.93–100. Menlo Park (California): AAAI Press.
(best student paper award)
PDF DocumentPDF

Further Publications (Abstracts, Technical Reports, Theses)

Frank Loebe (2015). Ontological Semantics: An Attempt at Foundations of Ontology Representation. PhD Thesis. Department of Mathematics and Computer Science, University of Leipzig.
PDF DocumentPDF, URN
Hans-Gert Gräbe, Frank Loebe, Sibylle Schwarz and Johannes Waldmann (2012). Computergestützte Übungsaufgaben. autotool und autotool-Netzwerk [abstract, in German]. HDS-Journal 2012(1):45–47.
PDF DocumentPDF
Heinrich Herre, Dayana Neumuth, Frank Loebe and Thomas Neumuth (2011). Modeling surgical processes: An ontological approach [abstract]. In: Maria Blettner and Stefanie J. Klug (ed.): Proceedings of the 56. Annual GMDS-Conference and the 6. Annual DGEpi-Conference, Mainz, Germany, Sep 26–29. Düsseldorf: German Medical Science Publishing House.
DOI
Frank Loebe (2007). Towards a Definition of Roles for Software Engineering and Programming Languages [position statement]. In: Guido Boella, Steffen Goebel, Friedrich Steimann, Steffen Zschaler & Michael Cebulla (ed.): Proceedings of the 2nd Workshop on Roles and Relationships in Object Oriented Programming, Multiagent Systems, and Ontologies (Roles 2007), Berlin, Germany, Jul 30–31. Forschungsberichte der Fakultät IV – Elektrotechnik und Informatik Nr. 2007–09, p. 47–49. Technical University of Berlin.

Frank Loebe (2006). A Comparison of Roles in the General Formal Ontology and the HL7 Reference Information Model [abstract]. In: Markus Löffler, Alfred Winter (ed.) Klinische Forschung Vernetzen: Proceedings of the 51. Annual Conference of the Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS), Leipzig, Germany, Sep 10–14. p.131–132. University of Leipzig.    also published as open-access by: Düsseldorf (Germany): German Medical Science. URL
LINK
Robert Hoehndorf, Patryk Burek, Frank Loebe, Heinrich Herre, Janet Kelso (2006). Modelling functions in bio-medicine [poster]. In: Markus Löffler, Alfred Winter (ed.) Klinische Forschung Vernetzen: Proceedings of the 51. Annual Conference of the Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS), Leipzig, Germany, Sep 10–14. p.332. University of Leipzig.    also published as open-access by: Düsseldorf (Germany): German Medical Science. URL
LINK
Matthias Löbe, Roland Mücke, Peter Menzel, Frank Loebe, Sebastian Stäubert (2006). Untersuchung der Eignung von Wikis für die vernetzte Forschung [poster]. In: Markus Löffler, Alfred Winter (ed.) Klinische Forschung Vernetzen: Proceedings of the 51. Annual Conference of the Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS), Leipzig, Germany, Sep 10–14. p.345. University of Leipzig.    also published as open-access by: Düsseldorf (Germany): German Medical Science. URL
LINK
Heinrich Herre, Barbara Heller, Patryk Burek, Robert Hoehndorf, Frank Loebe, Hannes Michalek (2006). General Formal Ontology (GFO): A Foundational Ontology Integrating Objects and Processes. Part I: Basic Principles (Version 1.0). Onto-Med Report No. 8. Research Group Ontologies in Medicine (Onto-Med), University of Leipzig.
PDF DocumentPDF
Frank Loebe (2003). An Analysis of Roles: Towards Ontology-Based Modelling. Onto-Med Report No. 6. Research Group Ontologies in Medicine (Onto-Med), University of Leipzig.
also: Master's Thesis, Computer Science Institute, Department of Mathematics and Computer Science, University of Leipzig.
PDF DocumentPDF

Teaching

Please see separate pages (in German).


 
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