IMISEWiki : Gruppen/OBML/Workshops/2010en


OBML 2010 – 2. Workshop of Ontologies in Biomedicine and Life Sciences

September 9–10, Mannheim, colocated with externer LinkGMDS 2010.


  • special issue with selected papers:

Supplement Issue of the Journal of Biomedical Semantics (2011)

             externer Link
Four out of five submissions to OBML 2010 whose authors had been invited to submit to the Journal of Biomedical Semantics were published as a supplement issue after independent reviewing:


Location and Time


Goals of the Workshop

The second workshop of the OBML community aims at gathering people that work in the main areas of OBML for an exchange of ideas, the presentation of recent results and the stimulation of cooperation. Areas of interest include, but are not limited to, the following topics:

Program, Abstracts & Presentations

Session 1: Medical Informatics and Semantic Web 

  • SBML2SMW: Bridging System Biology with Semantic Web Technologies for Biomedical Knowledge Acquisition and Hypothesis Elicitation
Toldo, LucaE-MailRequest
Cocos, CristianDateiPPT
Zaveri, AmrapaliDateiPPT
Uciteli, AlexandrDateiPPT

Session 2: Formal Ontology

  • Can a Hole Be Inflamed? On the Relation of Morphologic Abnormalities and Anatomical Cavities in SNOMED CT
Niggemann, JörgE-MailRequest
Röhl, Johannesexterner LinkODP
Jansen, LudgerDateiPPT

Guest Talk

Tegtmeier, Erwinexterner LinkPPTX

Session 3: Bio-Ontologies

Travillian, Ravensaraexterner LinkPPTX
  • The Ontology of Primary Immunodeficiency Diseases (PIDs) – Using PIDs to Rethink the Ontology of Phenotypes
Adams, NicoNA
Oellrich, AnikaPDF DokumentPDF
  • Towards a Cellular Genealogical Tree Ontology
Herre, HeinrichE-MailRequest

Session 4: Knowledge Representation and Description Logics

Schulz, Stefanexterner LinkPPTX
Schober, DanielDateiPPT
Grewe, NielsPDF DokumentPDF


  • Ontology Matching: Past, Present, and Future
Stuckenschmidt, HeinerNA